Fetoscopic Placental Vessel Segmentation and Registration (FetReg2021) challenge was organized as part of the MICCAI2021 Endoscopic Vision (EndoVis) challenge. Through FetReg2021 challenge, we released the first large-scale multi-centre dataset of fetoscopy laser photocoagulation procedure. The dataset contains 2,718 pixel-wise annotated images (for background, vessel, fetus, tool classes) from 24 different in vivo TTTS fetoscopic surgeries and 24 unannotated video clips video clips containing 9,616 frames for training and testing. The dataset is useful for the development of generalized and robust semantic segmentation and video mosaicking algorithms for long duration fetoscopy videos.
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The PAX-Ray++ dataset uses pseudo-labeled thorax CTs to enable the segmentation of anatomy in Chest X-Rays. By projecting the CTs to a 2D plane, we gather fine-grained annotated imaages resembling radiographs. It contains 7,377 frontal and lateral view images each with 157 anatomy classes and over 2 million annotated instances.
By releasing this dataset, we aim at providing a new testbed for computer vision techniques using Deep Learning. The main peculiarity is the shift from the domain of "natural images" proper of common benchmark dataset to biological imaging. We anticipate that the advantages of doing so could be two-fold: i) fostering research in biomedical-related fields - for which popular pre-trained models perform typically poorly - and ii) promoting methodological research in deep learning by addressing peculiar requirements of these images. Possible applications include but are not limited to semantic segmentation, object detection and object counting. The data consist of 283 high-resolution pictures (1600x1200 pixels) of mice brain slices acquired through a fluorescence microscope. The final goal is to individuate and count neurons highlighted in the pictures by means of a marker, so to assess the result of a biological experiment. The corresponding ground-truth labels were generated through a hy
This dataset is a collection of fluorescent images from mice in order to test an automatic cell counting tool that we developed. 62 images viewed from 2 or 3 different fields of views are shown. In brief, the dataset was derived from brain sections of a model for HIV-induced brain injury (HIVgp120tg), which expresses soluble gp120 envelope protein in astrocytes under the control of a modified GFAP promoter. The mice were in a mixed C57BL/6.129/SJL genetic background, and two genotypes of 9 month old male mice were selected: wild type controls (Resting, n = 3) and transgenic littermates (HIVgp120tg, Activated, n = 3). No randomization was performed. HIVgp120tg mice show among other hallmarks of human HIV neuropathology an increase in microglia numbers which indicates activation of the cells compared to non-transgenic littermate controls.
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The BCSS dataset contains over 20,000 segmentation annotations of tissue regions from breast cancer images from The Cancer Genome Atlas (TCGA). This large-scale dataset was annotated through the collaborative effort of pathologists, pathology residents, and medical students using the Digital Slide Archive. It enables the generation of highly accurate machine-learning models for tissue segmentation.
CheXlocalize is a radiologist-annotated segmentation dataset on chest X-rays. The dataset consists of two types of radiologist annotations for the localization of 10 pathologies: pixel-level segmentations and most-representative points. Annotations were drawn on images from the CheXpert validation and test sets. The dataset also consists of two separate sets of radiologist annotations: (1) ground-truth pixel-level segmentations on the validation and test sets, drawn by two board-certified radiologists, and (2) benchmark pixel-level segmentations and most-representative points on the test set, drawn by a separate group of three board-certified radiologists.
The dataset X of this work is an extension of the heartSeg dataset. Each sample x ∈ X is an RGB image capturing the heart region of Medaka (Oryzias latipes) hatchlings from a constant ventral view. Since the body of Medaka is see-through, noninvasive studies regarding the internal organs and the whole circulatory system are practicable. A Medaka’s heart contains three parts: the atrium, the ventricle, and the bulbus. The atrium receives deoxygenated blood from the circulatory system and delivers it to the ventricle, which forwards it into the bulbus. The bulbus is the heart’s exit chamber and provides the gill arches with a constant blood flow. The blood flow through these three chambers was captured in 63 short recordings (around 11 seconds with 24 frames per second each) in total, from which the single image samples x ∈ X are extracted. The dataset is split into training and test data following the heartSeg dataset with ntrain = 565 samples in the training set Xtrain and ntest = 165
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InfiniteRep is a synthetic, open-source dataset for fitness and physical therapy (PT) applications. It includes 1k videos of diverse avatars performing multiple repetitions of common exercises. It includes significant variation in the environment, lighting conditions, avatar demographics, and movement trajectories. From cadence to kinematic trajectory, each rep is done slightly differently -- just like real humans. InfiniteRep videos are accompanied by a rich set of pixel-perfect labels and annotations, including frame-specific repetition counts.
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